Debian 12 (Bookworm) native package

r-bioc-biovizbase

GNU R basic graphic utilities for visualization of genomic data

Packages / Debian 12 (Bookworm) / gnu-r / r-bioc-biovizbase

Package: r-bioc-biovizbase (1.46.0-1)

Maintainers:

Debian R Packages Maintainers

External Resources:

Homepage: [bioconductor.org]

GNU R basic graphic utilities for visualization of genomic data

Other Packages Related to r-bioc-biovizbase:

dep: [r-base-core] (>= 4.2.2.20221110-1)
GNU R core of statistical computation and graphics system
dep: r-api-4.0
Package not available
dep: r-api-bioc-3.16
Package not available
dep: [r-cran-scales]
Scale functions for visualization
dep: [r-cran-hmisc]
GNU R miscellaneous functions by Frank Harrell
dep: [r-cran-rcolorbrewer]
GNU R package providing suitable color palettes
dep: [r-cran-dichromat]
GNU R color schemes for dichromats
dep: [r-bioc-biocgenerics]
generic functions for Bioconductor
dep: [r-bioc-s4vectors] (>= 0.23.19)
BioConductor S4 implementation of vectors and lists
dep: [r-bioc-iranges] (>= 1.99.28)
GNU R low-level containers for storing sets of integer ranges
dep: [r-bioc-genomeinfodb] (>= 1.5.14)
BioConductor utilities for manipulating chromosome identifiers
dep: [r-bioc-genomicranges] (>= 1.23.21)
BioConductor representation and manipulation of genomic intervals
dep: [r-bioc-summarizedexperiment]
BioConductor assay container
dep: [r-bioc-biostrings] (>= 2.33.11)
GNU R string objects representing biological sequences
dep: [r-bioc-rsamtools] (>= 1.17.28)
GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: [r-bioc-genomicalignments] (>= 1.1.16)
BioConductor representation and manipulation of short genomic alignments
dep: [r-bioc-genomicfeatures] (>= 1.21.19)
GNU R tools for making and manipulating transcript centric annotations
dep: [r-bioc-annotationdbi]
GNU R Annotation Database Interface for BioConductor
dep: [r-bioc-variantannotation] (>= 1.11.4)
BioConductor annotation of genetic variants
dep: [r-bioc-ensembldb] (>= 1.99.13)
GNU R utilities to create and use an Ensembl based annotation database
dep: [r-bioc-annotationfilter] (>= 0.99.8)
facilities for filtering Bioconductor annotation resources
dep: [r-cran-rlang]
Functions for Base Types and Core R and 'Tidyverse' Features
dep: [libc6] (>= 2.2.5)
GNU C Library: Shared libraries

sug: [r-bioc-bsgenome]
BioConductor infrastructure for Biostrings-based genome data packages
sug: [r-bioc-rtracklayer]
GNU R interface to genome browsers and their annotation tracks
sug: [r-cran-runit]
GNU R package providing unit testing framework

Download r-bioc-biovizbase

Architecture	Package Size	Installed Size	Files
amd64	2.5 MiB	3.0 MiB	[list of files]
arm64	2.5 MiB	3.1 MiB	[list of files]

Package file paths (48)

Paths come from the repository package-file index for the observed builds. They describe archive/package associations, not every file that will exist on a running system after maintainer scripts, alternatives, generated state, diversions, or installation choices.

/usr/lib/R/site-library/biovizBase/data/Rdata.rdb
/usr/lib/R/site-library/biovizBase/data/Rdata.rds
/usr/lib/R/site-library/biovizBase/data/Rdata.rdx
/usr/lib/R/site-library/biovizBase/DESCRIPTION
/usr/lib/R/site-library/biovizBase/doc/index.html
/usr/lib/R/site-library/biovizBase/doc/intro.pdf
/usr/lib/R/site-library/biovizBase/doc/intro.R
/usr/lib/R/site-library/biovizBase/doc/intro.Rnw
/usr/lib/R/site-library/biovizBase/examples/color.R
/usr/lib/R/site-library/biovizBase/examples/data-gen.R
/usr/lib/R/site-library/biovizBase/examples/test.R
/usr/lib/R/site-library/biovizBase/extdata/17-1409-CEU-brca1.vcf.bgz
/usr/lib/R/site-library/biovizBase/extdata/17-1409-CEU-brca1.vcf.bgz.tbi
/usr/lib/R/site-library/biovizBase/extdata/crc1-missense.csv
/usr/lib/R/site-library/biovizBase/extdata/crc-rearrangment.csv
/usr/lib/R/site-library/biovizBase/extdata/plink.assoc.sub.txt
/usr/lib/R/site-library/biovizBase/extdata/SRR027894subRBM17.bam
/usr/lib/R/site-library/biovizBase/extdata/SRR027894subRBM17.bam.bai
/usr/lib/R/site-library/biovizBase/extdata/wg-brca1.sorted.bam
/usr/lib/R/site-library/biovizBase/extdata/wg-brca1.sorted.bam.bai
/usr/lib/R/site-library/biovizBase/help/aliases.rds
/usr/lib/R/site-library/biovizBase/help/AnIndex
/usr/lib/R/site-library/biovizBase/help/biovizBase.rdb
/usr/lib/R/site-library/biovizBase/help/biovizBase.rdx
/usr/lib/R/site-library/biovizBase/help/paths.rds
/usr/lib/R/site-library/biovizBase/html/00Index.html
/usr/lib/R/site-library/biovizBase/html/R.css
/usr/lib/R/site-library/biovizBase/INDEX
/usr/lib/R/site-library/biovizBase/libs/biovizBase.so
/usr/lib/R/site-library/biovizBase/Meta/data.rds
/usr/lib/R/site-library/biovizBase/Meta/features.rds
/usr/lib/R/site-library/biovizBase/Meta/hsearch.rds
/usr/lib/R/site-library/biovizBase/Meta/links.rds
/usr/lib/R/site-library/biovizBase/Meta/nsInfo.rds
/usr/lib/R/site-library/biovizBase/Meta/package.rds
/usr/lib/R/site-library/biovizBase/Meta/Rd.rds
/usr/lib/R/site-library/biovizBase/Meta/vignette.rds
/usr/lib/R/site-library/biovizBase/NAMESPACE
/usr/lib/R/site-library/biovizBase/NEWS
/usr/lib/R/site-library/biovizBase/R/biovizBase
/usr/lib/R/site-library/biovizBase/R/biovizBase.rdb
/usr/lib/R/site-library/biovizBase/R/biovizBase.rdx
/usr/lib/R/site-library/biovizBase/unitTests/test_ensdb.R
/usr/share/doc/r-bioc-biovizbase/changelog.Debian.gz
/usr/share/doc/r-bioc-biovizbase/copyright
/usr/share/doc/r-bioc-biovizbase/examples/vignettes/intro.Rnw
/usr/share/doc/r-bioc-biovizbase/examples/vignettes/intro-shrinkageFun.pdf
/usr/share/doc/r-bioc-biovizbase/examples/vignettes/intro-shrink-single.pdf

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

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OpenFactory can boot this operating system in a browser VM, or start a build that includes the native package name from this record.

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Versions, suites, and repositories

Each row is recorded package-index metadata for one version, architecture, suite, and repository. Names, URLs, and sizes are source-reported; a link is a potentially mutable retrieval location, not an OpenFactory redistribution claim or proof that OpenFactory retained the artifact bytes.

Version	Release	Architecture	Repository	Package size	Installed size	Publisher repository artifact
1.46.0-1	bookworm / main	amd64	Debian 12 · main · amd64	2.5 MiB	3.0 MiB	pool/main/r/r-bioc-biovizbase/r-bioc-biovizbase_1.46.0-1_amd64.deb
1.46.0-1	bookworm / main	arm64	Debian 12 · main · arm64	2.5 MiB	3.1 MiB	pool/main/r/r-bioc-biovizbase/r-bioc-biovizbase_1.46.0-1_arm64.deb

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

Checksums and observation dates

For an APT source, signature verification authenticates the repository metadata chain and the Packages index containing this source-reported artifact digest. It does not certify package safety.

1.46.0-1 / amd64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 1bb15b46f6e473f4606da6ac777e5d22ecf36e3f4450bf847e03aabf7d893282

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '1bb15b46f6e473f4606da6ac777e5d22ecf36e3f4450bf847e03aabf7d893282' 'r-bioc-biovizbase_1.46.0-1_amd64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5

1.46.0-1 / arm64Observed Sep 1, 2026 to Sep 1, 2026

Verification status: Metadata observed; artifact bytes were not independently fetched or hashed by this catalog import. The digest below is source-reported.

Source-reported sha256: 6c45baca71eb476c07d500ae367c438b20ed5ec3bd15fe767cda2bd648708942

After downloading that exact artifact, compare its bytes with the source-reported expected digest:

printf '%s  %s\n' '6c45baca71eb476c07d500ae367c438b20ed5ec3bd15fe767cda2bd648708942' 'r-bioc-biovizbase_1.46.0-1_arm64.deb' | sha256sum --check --strict -

A match establishes equality with the repository metadata value. It does not establish safety or catalog-side artifact retrieval.

Field source: Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00

Catalog record completeness

The completeness score measures metadata coverage, not software quality, security, compatibility, or suitability.

Summary and description: 25/25
Artifact path and source digest: 25/25
Dependency metadata: 15/15
Package-file index: 15/15
Homepage: 5/5
License text: 0/5
Source package or maintainer: 10/10

Recorded total: 95/100

Field source: Debian 12 (Bookworm) main amd64 revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5, Debian 12 (Bookworm) main arm64 revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00. The cross-OS mapping is catalog-derived from the source-reported homepage; it does not establish authorship or publisher identity

Sources and provenance

Field-source links above resolve here. Each source entry names the metadata publisher, trust tier, exact snapshot revision, signature result, and observation time; catalog-derived mappings are labeled separately.

Debian 12 (Bookworm) main amd64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-amd64:9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-amd64/Packages.xz
Expected SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Observed SHA-256: 9e0b5aabb2465b3d2e7a7fe27f9913846277833f7a2826e7767acccff5b588c5
Result: match verified
Debian 12 (Bookworm) main arm64Sep 1, 2026
Authoritative source; repository metadata signature verified, revision bookworm-main-arm64:2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Signature verification covers the configured repository metadata chain. It does not certify that the package is safe or suitable.
Repository-signature verification record
Signed object
https://deb.debian.org/debian/dists/bookworm/InRelease
Signed-object SHA-256
77737fa4b34f2693e982cc9ee35736816c35a7778fc2d326cc1bbf5b301fe1aa
Signer fingerprint
4CB50190207B4758A3F73A796ED0E7B82643E131
Keyring revision
debian-archive-keyring.gpg
SHA-256 506b815cbb32d9b6066b4a2aa524071e071761e7e7f68c3ac74f3061ba852017
Tool and policy
gpgv (GnuPG) 2.4.9
openfactory-software-catalog-signature-v1
Verification time
Sep 1, 2026
Signed Release → package-index hash linkage
Path: main/binary-arm64/Packages.xz
Expected SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Observed SHA-256: 2ddb1737692e8c45c53e8d57c0ce4cd21c78c5703b830c3226b1423566a06c00
Result: match verified